PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG330800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 449aa    MW: 49049.3 Da    PI: 6.845
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG330800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-18241296256
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+++++t+eq++eLe  Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  Pavir.2NG330800.1.p 241 RTKRRLTAEQVRELELSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 296
                          77889**************98**********************************9 PP

2HD-ZIP_I/II116.31.8e-37242333292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++L++a+d+l + +++L +++++Lr++
  Pavir.2NG330800.1.p 242 TKRRLTAEQVRELELSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFNRLRAAHDELLAGRDALLADNDRLRSQ 331
                          69****************9999******************************************************************99 PP

          HD-ZIP_I/II  91 lk 92 
                          + 
  Pavir.2NG330800.1.p 332 VI 333
                          86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-17232300IPR009057Homeodomain-like
PROSITE profilePS5007117.767237298IPR001356Homeobox domain
SMARTSM003896.7E-16239302IPR001356Homeobox domain
CDDcd000862.25E-14241299No hitNo description
PfamPF000468.4E-16241296IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-18247297IPR009057Homeodomain-like
PRINTSPR000316.1E-6269278IPR000047Helix-turn-helix motif
PROSITE patternPS000270273296IPR017970Homeobox, conserved site
PRINTSPR000316.1E-6278294IPR000047Helix-turn-helix motif
PfamPF021835.2E-13298340IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MNLTNPKGYF CHYAPRGHAL QMPFAPINSI LLQASEFTRF PHQFPPLKTT PLLPVLIPLG  60
LRLIKLVDDT AGQLLRPLRV SSHKTCGGEA CALPRRRRHG VHAVPHQVVN ARAVEHQLLP  120
PQVPGHRDLL LIRLAPAAGD TSVFLEEVEE RTYVHRFTSV APFRAAGEGG GQVFLFGGGG  180
GGGFLRSAPV VGAAGAADGW RRRKRPFQLT AAHEELQLQL ELGDDELAGF DYELHGGPQE  240
RTKRRLTAEQ VRELELSFEE EKRKLEPERK SELARRLGIA PRQVAVWFQN RRARWKAKQL  300
EQDFNRLRAA HDELLAGRDA LLADNDRLRS QVITLTDKLQ AKESSVPATA LKAATYASFE  360
QDQLCTETAT TAGAAPAAGY TGGAGDSPES YLAGARSPPS SSEDDCGGGD GDDGAFFLPN  420
PDMLLAAAAE EDGAQLSNWA WLWNEQQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290298RRARWKAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568501e-103AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959426.11e-116PREDICTED: homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC13e-74HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLK3ZVK91e-116K3ZVK9_SETIT; Uncharacterized protein
STRINGSi030640m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-29homeobox 1